|
|
Registro Completo |
Biblioteca(s): |
Biblioteca Rui Tendinha. |
Data corrente: |
08/08/2019 |
Data da última atualização: |
08/08/2019 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
FERRÃO, L. F. V.; CAIXETA, E. T.; CRUZ, C. D.; SOUZA, F. de F.; FERRÃO, M. A. G.; ZAMBOLIM, Z.; SAKIYAMA, N. S. |
Afiliação: |
Luís Felipe V. Ferrão, UFV; Eveline T. Caixeta, Embrapa Cafe; Cosme D. Cruz, UFV; Flávio F. de Souza, Embrapa Rondônia; Maria Amélia Gava Ferrão, Incaper/Embrapa Café; Laércio Zambolim, UFV; Ney S. Sakiyama, UFV. |
Título: |
The effects of encoding data in diversity studies and the applicability of the weighting index approach for data analysis from different molecular markers. |
Ano de publicação: |
2014 |
Fonte/Imprenta: |
Plant Systematics and Evolution, New York v. 300, p.1649-1661, feb. 2014. |
DOI: |
10.1007/s00606-014-09903 |
Idioma: |
Português |
Conteúdo: |
The use of molecular markers to study genetic diversity represents a breakthrough in this area, because of the increase in polymorphism levels and phenotypic neutrality. Codominant markers, such as microsatellites (SSR), are sensitive enough to distinguish the heterozygotes in genetic studies. Despite this advantage, there are some studies that ignore this feature and work with encoded data because of the simplicity of the evaluation, existence of polyploids and need for the combined analysis of different types of molecular markers. Thus, our study aims to investigate the consequences of these encodings on simulated and real data. In addition, we suggest an alternative analysis for genetic evaluations using different molecular markers. For the simulated data, we proposed the following two scenarios: the first uses SNP markers, and the second SSR markers. For real data, we used the SSR genotyping data from Coffea canephora accessions maintained in the Embrapa Germplasm Collection. The genetic diversity was studied using cluster analysis, the dissimilarity index, and the Bayesian approach implemented in the STRUCTURE software. For the simulated data, we observed a loss of genetic information to the encoded data in both scenarios. The same result was observed in the coffee studies. This loss of information was discussed in the context of a plantbreeding program, and the consequences were weighted to germplasm evaluations and the selection of parents for hybridization. In the studies that involved different types of markers, an alternative to the combined analysis is discussed, where the informativeness, coverage and quality of markers are weighted in the genetic diversity studies. MenosThe use of molecular markers to study genetic diversity represents a breakthrough in this area, because of the increase in polymorphism levels and phenotypic neutrality. Codominant markers, such as microsatellites (SSR), are sensitive enough to distinguish the heterozygotes in genetic studies. Despite this advantage, there are some studies that ignore this feature and work with encoded data because of the simplicity of the evaluation, existence of polyploids and need for the combined analysis of different types of molecular markers. Thus, our study aims to investigate the consequences of these encodings on simulated and real data. In addition, we suggest an alternative analysis for genetic evaluations using different molecular markers. For the simulated data, we proposed the following two scenarios: the first uses SNP markers, and the second SSR markers. For real data, we used the SSR genotyping data from Coffea canephora accessions maintained in the Embrapa Germplasm Collection. The genetic diversity was studied using cluster analysis, the dissimilarity index, and the Bayesian approach implemented in the STRUCTURE software. For the simulated data, we observed a loss of genetic information to the encoded data in both scenarios. The same result was observed in the coffee studies. This loss of information was discussed in the context of a plantbreeding program, and the consequences were weighted to germplasm evaluations and the selection of parents for hybridization. In the st... Mostrar Tudo |
Palavras-Chave: |
Café canéfora; Café conilon; Codominant markers; Coffee; Diversidade genética; Dominant markers Germplasm; Marcadores dominantes; SSR STRUCTURE. |
Thesagro: |
Café; Coffea Canephora; Marcador molecular. |
Categoria do assunto: |
-- |
URL: |
https://biblioteca.incaper.es.gov.br/digital/bitstream/123456789/3664/1/the-effects-enconding-ferrao.pdf
|
Marc: |
LEADER 02777naa a2200337 a 4500 001 1021517 005 2019-08-08 008 2014 bl uuuu u00u1 u #d 024 7 $a10.1007/s00606-014-09903$2DOI 100 1 $aFERRÃO, L. F. V. 245 $aThe effects of encoding data in diversity studies and the applicability of the weighting index approach for data analysis from different molecular markers.$h[electronic resource] 260 $c2014 520 $aThe use of molecular markers to study genetic diversity represents a breakthrough in this area, because of the increase in polymorphism levels and phenotypic neutrality. Codominant markers, such as microsatellites (SSR), are sensitive enough to distinguish the heterozygotes in genetic studies. Despite this advantage, there are some studies that ignore this feature and work with encoded data because of the simplicity of the evaluation, existence of polyploids and need for the combined analysis of different types of molecular markers. Thus, our study aims to investigate the consequences of these encodings on simulated and real data. In addition, we suggest an alternative analysis for genetic evaluations using different molecular markers. For the simulated data, we proposed the following two scenarios: the first uses SNP markers, and the second SSR markers. For real data, we used the SSR genotyping data from Coffea canephora accessions maintained in the Embrapa Germplasm Collection. The genetic diversity was studied using cluster analysis, the dissimilarity index, and the Bayesian approach implemented in the STRUCTURE software. For the simulated data, we observed a loss of genetic information to the encoded data in both scenarios. The same result was observed in the coffee studies. This loss of information was discussed in the context of a plantbreeding program, and the consequences were weighted to germplasm evaluations and the selection of parents for hybridization. In the studies that involved different types of markers, an alternative to the combined analysis is discussed, where the informativeness, coverage and quality of markers are weighted in the genetic diversity studies. 650 $aCafé 650 $aCoffea Canephora 650 $aMarcador molecular 653 $aCafé canéfora 653 $aCafé conilon 653 $aCodominant markers 653 $aCoffee 653 $aDiversidade genética 653 $aDominant markers Germplasm 653 $aMarcadores dominantes 653 $aSSR STRUCTURE 700 1 $aCAIXETA, E. T. 700 1 $aCRUZ, C. D. 700 1 $aSOUZA, F. de F. 700 1 $aFERRÃO, M. A. G. 700 1 $aZAMBOLIM, Z. 700 1 $aSAKIYAMA, N. S. 773 $tPlant Systematics and Evolution, New York$gv. 300, p.1649-1661, feb. 2014.
Download
Esconder MarcMostrar Marc Completo |
Registro original: |
Biblioteca Rui Tendinha (BRT) |
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
Fechar
|
|
Registro Completo |
Biblioteca(s): |
Biblioteca Rui Tendinha. |
Data corrente: |
12/09/2013 |
Data da última atualização: |
10/02/2015 |
Tipo da produção científica: |
Documentos |
Autoria: |
VERDIN FILHO, A. C.; ALIXANDRE, F. T.; MORELI, A. P.; FERRÃO, R. G.; FORNAZIER, M. J.; FERRÃO, M. A. G.; FONSECA, A. F. A. da.; VOLPI, P. S.; LOBATO, M. M.; NOVAK, L. R.; MELO, E. V.; DAHER, F. de A.; TEIXEIRA, M. M. |
Afiliação: |
Abraão Carlos Verdin Filho, Incaper; Fabiano Tristao Alixandre, Incaper; Aldemar Polonini Moreli, Incaper; Romário Gava Ferrão, Incaper; Mauricio José Fornazier, Incaper; Maria Amélia Gava Ferrão, Incaper/Embrapa Café; Aymbiré Francisco Almeida da Fonseca, Incaper/Embrapa Café; Paulo Sérgio Volpi, Incaper; Marcelo Melo Lobato; Leandro Reis Novak, Incaper; Evair Vieira de Melo, Incaper; Frederico de Almeida Daher; Marcos Moulin Teixeira, Incaper. |
Título: |
Café conilon de qualidade. |
Título original: |
Café conilon de qualidade : conheça as tecnologias para a colheita, a secagem, o beneficiamente do seu produto. |
Edição: |
3 ed. |
Ano de publicação: |
2010 |
Fonte/Imprenta: |
Vitória, ES : Incaper, 2010. |
Série: |
(Incaper. Documentos, 160). |
ISSN: |
1519-2059 |
Idioma: |
Português |
Notas: |
Campanha do café. |
Palavras-Chave: |
Café - Armazenamento; Café - Colheita; Café - Secagem; Café Conilon; Coffea Canéfora. |
Categoria do assunto: |
-- |
URL: |
http://biblioteca.incaper.es.gov.br/digital/bitstream/item/620/1/campanhacafe.pdf
|
Marc: |
LEADER 01049nam a2200361 a 4500 001 1000520 005 2015-02-10 008 2010 bl uuuu u0uu1 u #d 022 $a1519-2059 100 1 $aVERDIN FILHO, A. C. 240 $aCafé conilon de qualidade : conheça as tecnologias para a colheita, a secagem, o beneficiamente do seu produto. 245 $aCafé conilon de qualidade. 250 $a3 ed. 260 $aVitória, ES : Incaper$c2010 490 $a(Incaper. Documentos, 160). 500 $aCampanha do café. 653 $aCafé - Armazenamento 653 $aCafé - Colheita 653 $aCafé - Secagem 653 $aCafé Conilon 653 $aCoffea Canéfora 700 1 $aALIXANDRE, F. T. 700 1 $aMORELI, A. P. 700 1 $aFERRÃO, R. G. 700 1 $aFORNAZIER, M. J. 700 1 $aFERRÃO, M. A. G. 700 1 $aFONSECA, A. F. A. da. 700 1 $aVOLPI, P. S. 700 1 $aLOBATO, M. M. 700 1 $aNOVAK, L. R. 700 1 $aMELO, E. V. 700 1 $aDAHER, F. de A. 700 1 $aTEIXEIRA, M. M.
Download
Esconder MarcMostrar Marc Completo |
Registro original: |
Biblioteca Rui Tendinha (BRT) |
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
Fechar
|
Expressão de busca inválida. Verifique!!! |
|
|